Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs17030318 chr2:65740165 C/T 5.12E-7 100 15.3 13.9 8.8 KM Plot
SKCM rs17030328 chr2:65755955 C/G 5.12E-7 100 15.3 13.9 8.8 KM Plot
SKCM rs17089028 chr18:71938536 G/A 0.000111 100 15.57 12.6 14.7 KM Plot
SKCM rs17135807 chr11:77395252 A/T 2.8E-5 101 15.35 14 9 KM Plot
SKCM rs17153000 chr8:11084501 C/T 2.44E-5 101 14.8 15.47 9 KM Plot
SKCM rs171636 chr5:148434545 G/A 1.84E-5 100 15.02 13.8 9 KM Plot
SKCM rs17477934 chr2:65768233 C/G 5.12E-7 100 15.3 13.9 8.8 KM Plot
SKCM rs17497684 chr5:558307 T/C 0 100 15.3 14.7 6.33 KM Plot
SKCM rs17563576 chr5:560476 A/G 0 101 15.3 13.35 6.33 KM Plot
SKCM rs17687426 chr12:63397900 G/C 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs17738403 chr12:63389200 A/G 2.4E-7 100 15.13 14.3 8.8 KM Plot
SKCM rs17738485 chr12:63394932 T/C 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs17763435 chr12:63416511 A/G 2.13E-7 101 8.8 13.8 15.47 KM Plot
SKCM rs17763441 chr12:63418335 T/C 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs17779751 chr17:70410065 A/G 1.77E-5 97 15.3 13.8 9.32 KM Plot